3D structure

PDB id
5FCI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the vacant uL3 W255C mutant 80S yeast ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CGUAG*UCAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5FCI_174 not in the Motif Atlas
Homologous match to IL_8C3A_428
Geometric discrepancy: 0.0853
The information below is about IL_8C3A_428
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.5
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
16

Unit IDs

5FCI|1|2|C|627
5FCI|1|2|G|628
5FCI|1|2|U|629
5FCI|1|2|A|630
5FCI|1|2|G|631
*
5FCI|1|2|U|968
5FCI|1|2|C|969
5FCI|1|2|A|970
5FCI|1|2|A|971
5FCI|1|2|G|972

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain C1
40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)
Chain C3
40S ribosomal protein S13
Chain D2
40S ribosomal protein S22-A
Chain D3
40S ribosomal protein S23-A

Coloring options:


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