IL_8C3A_428

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.5

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8C3A|1|CM|C|625
8C3A|1|CM|G|626
8C3A|1|CM|U|627
8C3A|1|CM|A|628
8C3A|1|CM|G|629
*
8C3A|1|CM|U|953
8C3A|1|CM|C|954
8C3A|1|CM|A|955
8C3A|1|CM|A|956
8C3A|1|CM|G|957

Current chains

Chain CM

18S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain CY

40S ribosomal protein S11A

Chain DA

40S ribosomal protein S13

Chain DJ

40S ribosomal protein S22-A

Chain DK

Ribosomal protein S23 (S12)