IL_5FCI_181

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGGU*ACCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGGU,ACCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_181 not in the Motif Atlas

Geometric match to IL_1DUQ_001

Geometric discrepancy: 0.2935

The information below is about IL_1DUQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

5FCI|1|2|U|822
5FCI|1|2|G|823
5FCI|1|2|G|824
5FCI|1|2|U|825
*
5FCI|1|2|A|847
5FCI|1|2|C|848
5FCI|1|2|C|849
5FCI|1|2|A|850

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)

Chain M9

60S ribosomal protein L19-A