IL_5FCI_194

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_194 not in the Motif Atlas

Homologous match to IL_8P9A_428

Geometric discrepancy: 0.0875

The information below is about IL_8P9A_428

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

5FCI|1|2|G|1111
5FCI|1|2|G|1112
5FCI|1|2|A|1113
5FCI|1|2|G|1114
5FCI|1|2|U|1115
5FCI|1|2|A|1116
5FCI|1|2|U|1117
5FCI|1|2|G|1118
*
5FCI|1|2|U|1129
5FCI|1|2|G|1130
5FCI|1|2|A|1131
5FCI|1|2|A|1132
5FCI|1|2|A|1133
5FCI|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain Q1

60S ribosomal protein L41-A