IL_8P9A_428

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8P9A|1|sR|G|1111
8P9A|1|sR|G|1112
8P9A|1|sR|A|1113
8P9A|1|sR|G|1114
8P9A|1|sR|U|1115
8P9A|1|sR|A|1116
8P9A|1|sR|U|1117
8P9A|1|sR|G|1118
*
8P9A|1|sR|U|1129
8P9A|1|sR|G|1130
8P9A|1|sR|A|1131
8P9A|1|sR|A|1132
8P9A|1|sR|A|1133
8P9A|1|sR|C|1134

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain DP

Large ribosomal subunit protein eL41B

Chain d3

40S ribosomal protein S23-A