IL_5FCI_311
3D structure
- PDB id
- 5FCI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the vacant uL3 W255C mutant 80S yeast ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GGC,GCC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FCI_311 not in the Motif Atlas
- Geometric match to IL_7A0S_020
- Geometric discrepancy: 0.2553
- The information below is about IL_7A0S_020
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
5FCI|1|5|G|1560
5FCI|1|5|G|1561
5FCI|1|5|C|1562
*
5FCI|1|5|G|1577
5FCI|1|5|C|1578
5FCI|1|5|C|1579
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l2
- 60S ribosomal protein L2-A
- Chain l8
- 60S ribosomal protein L8-A
- Chain n5
- 60S ribosomal protein L25
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