IL_5FCI_369

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAC*GUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCAC,GUGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_369 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2667

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5FCI|1|5|C|3161
5FCI|1|5|C|3162
5FCI|1|5|A|3163
5FCI|1|5|C|3164
*
5FCI|1|5|G|3286
5FCI|1|5|U|3287
5FCI|1|5|G|3288
5FCI|1|5|G|3289

Current chains

Chain 5

25S ribosomal RNA

Nearby chains