IL_5FCI_393

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_393 not in the Motif Atlas

Homologous match to IL_8P9A_380

Geometric discrepancy: 0.0629

The information below is about IL_8P9A_380

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

5FCI|1|6|G|109
5FCI|1|6|U|110
5FCI|1|6|U|111
5FCI|1|6|A|112
*
5FCI|1|6|U|302
5FCI|1|6|U|303
5FCI|1|6|U|304
5FCI|1|6|C|305

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)

Chain s4

40S ribosomal protein S4-A

Chain s8

40S ribosomal protein S8-A