IL_5FCI_458

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

5FCI|1|6|U|1370, 5FCI|1|6|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_458 not in the Motif Atlas

Homologous match to IL_8C3A_464

Geometric discrepancy: 0.5238

The information below is about IL_8C3A_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5FCI|1|6|G|1352
5FCI|1|6|U|1353
5FCI|1|6|G|1354
*
5FCI|1|6|U|1369
5FCI|1|6|U|1370
5FCI|1|6|A|1371
5FCI|1|6|U|1372
5FCI|1|6|C|1373

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain c9

40S ribosomal protein S19-A

Chain d0

40S ribosomal protein S20