IL_5FCI_484

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

5FCI|1|8|G|95

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_484 not in the Motif Atlas

Homologous match to IL_8P4V_144

Geometric discrepancy: 0.0852

The information below is about IL_8P4V_144

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5FCI|1|8|U|64
5FCI|1|8|A|65
5FCI|1|8|A|66
*
5FCI|1|8|U|93
5FCI|1|8|C|94
5FCI|1|8|G|95
5FCI|1|8|A|96

Current chains

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain n6

60S ribosomal protein L26-A

Chain o5

60S ribosomal protein L35-A

Chain o7

60S ribosomal protein L37-A