IL_5FCI_486

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_486 not in the Motif Atlas

Geometric match to IL_8C3A_070

Geometric discrepancy: 0.2328

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

5FCI|1|1|C|163
5FCI|1|1|A|164
5FCI|1|1|A|165
5FCI|1|1|C|166
*
5FCI|1|1|G|256
5FCI|1|1|U|257
5FCI|1|1|G|258

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M3

60S ribosomal protein L13-A

Chain O5

60S ribosomal protein L35-A