IL_5FCI_508

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

5FCI|1|5|C|1016, 5FCI|1|5|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_508 not in the Motif Atlas

Homologous match to IL_8C3A_046

Geometric discrepancy: 0.3883

The information below is about IL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53206.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5FCI|1|5|G|1013
5FCI|1|5|U|1014
5FCI|1|5|U|1015
5FCI|1|5|C|1016
5FCI|1|5|C|1017
5FCI|1|5|G|1018
*
5FCI|1|5|U|1034
5FCI|1|5|G|1035
5FCI|1|5|A|1036
5FCI|1|5|C|1037

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m0

60S ribosomal protein L10

Chain m1

60S ribosomal protein L11-A

Chain sM

Suppressor protein STM1,Suppressor protein STM1