IL_5FCJ_077

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AAUAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCJ_077 not in the Motif Atlas

Homologous match to IL_8P9A_302

Geometric discrepancy: 0.0578

The information below is about IL_8P9A_302

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.1

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5FCJ|1|1|A|1883
5FCJ|1|1|A|1884
5FCJ|1|1|U|1885
5FCJ|1|1|A|1886
5FCJ|1|1|A|1887
5FCJ|1|1|U|1888
5FCJ|1|1|G|1889
*
5FCJ|1|1|C|2346
5FCJ|1|1|U|2347
5FCJ|1|1|A|2348
5FCJ|1|1|U|2349

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain M7

60S ribosomal protein L17-A

Chain O1

60S ribosomal protein L31-A