IL_5FCJ_140

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCC*GUUGU

Length

8 nucleotides

Bulged bases

5FCJ|1|1|U|3354, 5FCJ|1|1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCJ_140 not in the Motif Atlas

Geometric match to IL_4PDQ_004

Geometric discrepancy: 0.2547

The information below is about IL_4PDQ_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5FCJ|1|1|G|3348
5FCJ|1|1|C|3349
5FCJ|1|1|C|3350
*
5FCJ|1|1|G|3353
5FCJ|1|1|U|3354
5FCJ|1|1|U|3355
5FCJ|1|1|G|3356
5FCJ|1|1|U|3357

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N2

60S ribosomal protein L22-A

Chain S8

40S ribosomal protein S8-A