IL_5FCJ_379

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCJ_379 not in the Motif Atlas

Homologous match to IL_8P9A_355

Geometric discrepancy: 0.0934

The information below is about IL_8P9A_355

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5FCJ|1|5|C|3235
5FCJ|1|5|U|3236
5FCJ|1|5|U|3237
5FCJ|1|5|G|3238
*
5FCJ|1|5|C|3249
5FCJ|1|5|U|3250
5FCJ|1|5|U|3251
5FCJ|1|5|G|3252

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m6

60S ribosomal protein L16-A