IL_5FCJ_500

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

5FCJ|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCJ_500 not in the Motif Atlas

Homologous match to IL_8P9A_422

Geometric discrepancy: 0.3588

The information below is about IL_8P9A_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

5FCJ|1|2|U|893
5FCJ|1|2|U|894
5FCJ|1|2|G|895
5FCJ|1|2|U|896
5FCJ|1|2|C|897
5FCJ|1|2|A|898
5FCJ|1|2|G|899
*
5FCJ|1|2|C|910
5FCJ|1|2|U|911
5FCJ|1|2|U|912
5FCJ|1|2|G|913
5FCJ|1|2|G|914
5FCJ|1|2|A|915
5FCJ|1|2|U|916
5FCJ|1|2|U|917
5FCJ|1|2|U|918
5FCJ|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S ribosomal protein S14-A

Chain S1

40S ribosomal protein S1-A