IL_5FDU_006
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86124.1
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 32
Unit IDs
5FDU|1|1A|G|177
5FDU|1|1A|G|178
5FDU|1|1A|A|179
5FDU|1|1A|A|180
5FDU|1|1A|C|181
5FDU|1|1A|U|182
5FDU|1|1A|G|183
*
5FDU|1|1A|C|190
5FDU|1|1A|U|191
5FDU|1|1A|C|192
5FDU|1|1A|A|193
5FDU|1|1A|G|194
5FDU|1|1A|U|195
5FDU|1|1A|A|196
5FDU|1|1A|C|197
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 17
- 50S ribosomal protein L34
- Chain 18
- 50S ribosomal protein L35
- Chain 1P
- 50S ribosomal protein L15
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