IL_5FDU_027

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66059.1

Basepair signature

cWW-tSH-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5FDU|1|1A|U|905
5FDU|1|1A|G|906
5FDU|1|1A|U|907
5FDU|1|1A|A|908
5FDU|1|1A|G|909
*
5FDU|1|1A|C|961
5FDU|1|1A|G|962
5FDU|1|1A|A|963
5FDU|1|1A|A|964
5FDU|1|1A|G|965

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1Q

50S ribosomal protein L16