Motif IL_66059.1 Version IL_66059.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-3 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_033 | 4V9F | 0.2386 | 0 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | 0 | LSU rRNA | G | 952 | G | 953 | U | 954 | A | 955 | G | 956 | * | C | 1011 | A | 1012 | A | 1013 | A | 1014 | C | 1015 | cWW | cSH | tWH | tHS | cWW | |
| 2 | IL_5FDU_027 | 5FDU | 0.0000 | 0 | 5x5 Sarcin-Ricin with intercalated A; G-bulge (H) | 1A | LSU rRNA | U | 905 | G | 906 | U | 907 | A | 908 | G | 909 | * | C | 961 | G | 962 | A | 963 | A | 964 | G | 965 | cWW | cSH | tWH | tHS | cWW | |
| 3 | IL_3J9W_081 | 3J9W | 0.8549 | 0 | AAA cross-strand stack (H) | BA | LSU rRNA | C | 664 | G | 665 | G | 666 | A | 667 | G | 668 | * | U | 650 | U | 651 | A | 652 | A | 653 | G | 654 | cWW | tSH | ntHW | cWW | ||
| 4 | IL_4IOA_012 | 4IOA | 0.8724 | 0 | AAA cross-strand stack | X | LSU rRNA | C | 629 | G | 630 | G | 631 | A | 632 | G | 633 | * | U | 616 | U | 617 | A | 618 | A | 619 | G | 620 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAG*UUAAG | 2 |
| GGUAG*CAAAC | 1 |
| UGUAG*CGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA*UAA | 2 |
| GUA*AAA | 1 |
| GUA*GAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- AAA cross-strand stack (H) (1)
- AAA cross-strand stack (1)
- 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)
- 5x5 Sarcin-Ricin with intercalated A; G-bulge (H) (1)
- Basepair signature
- cWW-tSH-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.24 | Avg 0.53 | Max 0.89
Coloring options: