IL_5FDU_039

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

5FDU|1|1A|U|1187, 5FDU|1|1A|A|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76337.1

Basepair signature

cWW-tWW-cSH-L-tWW-tWW-cSH-cWW

Number of instances in this motif group

6

Unit IDs

5FDU|1|1A|C|1064
5FDU|1|1A|U|1065
5FDU|1|1A|A|1066
5FDU|1|1A|A|1067
5FDU|1|1A|G|1068
5FDU|1|1A|U|1069
5FDU|1|1A|G|1070
*
5FDU|1|1A|C|1185
5FDU|1|1A|U|1186
5FDU|1|1A|U|1187
5FDU|1|1A|A|1188
5FDU|1|1A|A|1189
5FDU|1|1A|G|1190

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13