Motif IL_76337.1 Version IL_76337.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 2-4 | 2-10 | 4-9 | 4-10 | 5-6 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J9W_103 | 3J9W | 0.4368 | 1 | BA | LSU rRNA | U | 1064 | U | 1065 | A | 1066 | A | 1067 | G | 1068 | U | 1069 | G | 1070 | * | C | 1186 | U | 1187 | A | 1188 | A | 1190 | cWW | ntHW | ntWW | cSH | cWW | |||
| 2 | IL_4IOA_035 | 4IOA | 0.3964 | 2 | X | LSU rRNA | C | 1029 | U | 1030 | C | 1031 | A | 1032 | G | 1033 | U | 1034 | G | 1035 | * | C | 1150 | U | 1151 | A | 1153 | G | 1155 | cWW | ntWH | ntHW | ntWW | cSH | cWW | ||
| 3 | IL_5J7L_280 | 5J7L | 0.0664 | 1 | Kink-turn related | DA | LSU rRNA | U | 1018 | U | 1019 | A | 1020 | A | 1021 | G | 1022 | U | 1023 | G | 1024 | * | C | 1140 | U | 1141 | A | 1142 | A | 1144 | cWW | ncSH | tWW | tWW | ntWW | cSH | cWW |
| 4 | IL_5FDU_039 | 5FDU | 0.0000 | 2 | 1A | LSU rRNA | C | 1064 | U | 1065 | A | 1066 | A | 1067 | G | 1068 | U | 1069 | G | 1070 | * | C | 1185 | U | 1186 | A | 1188 | G | 1190 | cWW | ncSH | tWW | tWW | cSH | cWW | ||
| 5 | IL_4V9F_040 | 4V9F | 0.0640 | 2 | Kink-turn related | 0 | LSU rRNA | U | 1115 | U | 1116 | A | 1117 | A | 1118 | G | 1119 | U | 1120 | G | 1121 | * | C | 1243 | U | 1244 | A | 1246 | A | 1248 | cWW | ncSH | tWW | tWW | cSH | cWW | |
| 6 | IL_5AN9_009 | 5AN9 | 0.6688 | 3 | N | LSU rRNA | C | 1423 | U | 1424 | A | 1425 | A | 1426 | U | 1427 | A | 1428 | G | 1429 | * | C | 1549 | U | 1550 | C | 1553 | G | 1555 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAGUG*CUAAA | 2 |
| CUCAGUG*CUCAAG | 1 |
| CUAAGUG*CUUAAG | 1 |
| UUAAGUG*CUCAAA | 1 |
| CUAAUAG*CUAGCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAGU*UAA | 2 |
| UCAGU*UCAA | 1 |
| UAAGU*UUAA | 1 |
| UAAGU*UCAA | 1 |
| UAAUA*UAGCA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Kink-turn related (2)
- Basepair signature
- cWW-tWW-cSH-L-tWW-tWW-cSH-cWW
- Heat map statistics
- Min 0.06 | Avg 0.36 | Max 0.76
Coloring options: