IL_5FDU_044

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGG,CCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_044 not in the Motif Atlas

Geometric match to IL_1NBS_006

Geometric discrepancy: 0.2877

The information below is about IL_1NBS_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5FDU|1|1A|A|1103
5FDU|1|1A|G|1104
5FDU|1|1A|G|1105
*
5FDU|1|1A|C|1125
5FDU|1|1A|C|1126
5FDU|1|1A|U|1127

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1Z

50S ribosomal protein L25