IL_5FDU_048
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 5FDU|1|1A|U|1256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02471.1
- Basepair signature
- cWW-tSS-L-tSH-tSS-tHS-tHS-cWW
- Number of instances in this motif group
- 41
Unit IDs
5FDU|1|1A|C|1253
5FDU|1|1A|G|1254
5FDU|1|1A|A|1255
5FDU|1|1A|U|1256
5FDU|1|1A|G|1257
5FDU|1|1A|A|1258
5FDU|1|1A|A|1259
5FDU|1|1A|G|1260
*
5FDU|1|1A|U|1280
5FDU|1|1A|G|1281
5FDU|1|1A|G|1282
5FDU|1|1A|A|1283
5FDU|1|1A|G|1284
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1U
- 50S ribosomal protein L20
Coloring options: