IL_5FDU_050

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86124.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

32

Unit IDs

5FDU|1|1A|A|1308
5FDU|1|1A|U|1309
5FDU|1|1A|G|1310
5FDU|1|1A|A|1311
5FDU|1|1A|G|1312
5FDU|1|1A|U|1313
5FDU|1|1A|A|1314
5FDU|1|1A|A|1315
*
5FDU|1|1A|U|2033
5FDU|1|1A|G|2034
5FDU|1|1A|A|2035
5FDU|1|1A|A|2036
5FDU|1|1A|A|2037
5FDU|1|1A|U|2038
5FDU|1|1A|U|2039

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1F

50S ribosomal protein L4

Chain 1W

50S ribosomal protein L22