IL_5FDU_069

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5FDU|1|1A|G|1746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95863.1

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5FDU|1|1A|C|1733
5FDU|1|1A|G|1734
5FDU|1|1A|U|1735
5FDU|1|1A|A|1736
5FDU|1|1A|A|1737
5FDU|1|1A|C|1738
*
5FDU|1|1A|G|1743
5FDU|1|1A|G|1744
5FDU|1|1A|A|1745
5FDU|1|1A|G|1746
5FDU|1|1A|A|1747
5FDU|1|1A|A|1748
5FDU|1|1A|G|1749

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA