IL_5FDU_087

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_087 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.1707

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDU|1|1A|G|2146
5FDU|1|1A|G|2147
5FDU|1|1A|A|2148
5FDU|1|1A|G|2149
*
5FDU|1|1A|C|2183
5FDU|1|1A|G|2184
5FDU|1|1A|C|2185
5FDU|1|1A|C|2186
5FDU|1|1A|G|2187
5FDU|1|1A|G|2188
5FDU|1|1A|U|2189
5FDU|1|1A|G|2190
5FDU|1|1A|A|2191
5FDU|1|1A|A|2192
5FDU|1|1A|A|2193
5FDU|1|1A|U|2194
5FDU|1|1A|A|2195
5FDU|1|1A|C|2196

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains