IL_5FDU_128

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_128 not in the Motif Atlas

Homologous match to IL_5J7L_015

Geometric discrepancy: 0.1371

The information below is about IL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5FDU|1|1a|U|249
5FDU|1|1a|A|250
5FDU|1|1a|G|251
5FDU|1|1a|U|252
*
5FDU|1|1a|A|274
5FDU|1|1a|G|275

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1q

30S ribosomal protein S17