IL_5FDU_169

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

5FDU|1|1a|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_169 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0658

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5FDU|1|1a|C|1399
5FDU|1|1a|5MC|1400
5FDU|1|1a|G|1401
*
5FDU|1|1a|C|1501
5FDU|1|1a|A|1502
5FDU|1|1a|A|1503
5FDU|1|1a|G|1504

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1x

Ribosome-associated inhibitor A