IL_5FDU_186

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

5FDU|1|2A|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_186 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1611

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5FDU|1|2A|C|280
5FDU|1|2A|G|281
5FDU|1|2A|A|282
5FDU|1|2A|A|283
5FDU|1|2A|U|284
*
5FDU|1|2A|A|357
5FDU|1|2A|U|358
5FDU|1|2A|A|359
5FDU|1|2A|G|360

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains