IL_5FDU_228

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

5FDU|1|2A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_228 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0661

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5FDU|1|2A|C|1417
5FDU|1|2A|G|1418
5FDU|1|2A|A|1419
5FDU|1|2A|U|1420
5FDU|1|2A|G|1421
*
5FDU|1|2A|C|1577
5FDU|1|2A|U|1578
5FDU|1|2A|A|1579
5FDU|1|2A|A|1580
5FDU|1|2A|G|1581

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains