IL_5FDU_236

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

5FDU|1|2A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_236 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.052

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5FDU|1|2A|G|1526
5FDU|1|2A|G|1527
5FDU|1|2A|A|1528
5FDU|1|2A|A|1528|||A
5FDU|1|2A|G|1529
*
5FDU|1|2A|U|1540
5FDU|1|2A|G|1541
5FDU|1|2A|A|1542
5FDU|1|2A|C|1543
5FDU|1|2A|A|1544
5FDU|1|2A|A|1545
5FDU|1|2A|C|1546

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains