IL_5FDU_252

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

5FDU|1|2A|C|2055, 5FDU|1|2A|C|2612, 5FDU|1|2A|U|2613, 5FDU|1|2A|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_252 not in the Motif Atlas

Homologous match to IL_7RQB_079

Geometric discrepancy: 0.0743

The information below is about IL_7RQB_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5FDU|1|2A|A|2054
5FDU|1|2A|C|2055
5FDU|1|2A|G|2056
5FDU|1|2A|A|2057
*
5FDU|1|2A|U|2611
5FDU|1|2A|C|2612
5FDU|1|2A|U|2613
5FDU|1|2A|A|2614
5FDU|1|2A|U|2615

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2W

50S ribosomal protein L22

Chain 2y

Metalnikowin I