IL_5FDU_260

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5FDU|1|2A|G|2116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_260 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.356

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

5FDU|1|2A|G|2110
5FDU|1|2A|C|2111
5FDU|1|2A|G|2112
5FDU|1|2A|U|2113
5FDU|1|2A|A|2114
5FDU|1|2A|G|2115
5FDU|1|2A|G|2116
5FDU|1|2A|A|2117
5FDU|1|2A|U|2118
5FDU|1|2A|A|2119
5FDU|1|2A|G|2120
*
5FDU|1|2A|C|2178
5FDU|1|2A|C|2179

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains