IL_5FDU_281

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

5FDU|1|2A|U|2689, 5FDU|1|2A|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_281 not in the Motif Atlas

Homologous match to IL_9DFE_104

Geometric discrepancy: 0.0731

The information below is about IL_9DFE_104

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

5FDU|1|2A|U|2687
5FDU|1|2A|U|2688
5FDU|1|2A|U|2689
5FDU|1|2A|C|2690
5FDU|1|2A|C|2691
*
5FDU|1|2A|G|2718
5FDU|1|2A|G|2719
5FDU|1|2A|U|2720
5FDU|1|2A|A|2721
5FDU|1|2A|G|2722

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19