IL_5FDU_323
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGAG*UC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FDU_323 not in the Motif Atlas
- Homologous match to IL_4LFB_032
- Geometric discrepancy: 0.0988
- The information below is about IL_4LFB_032
- Detailed Annotation
- Left turn
- Broad Annotation
- Left turn
- Motif group
- IL_29346.2
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
5FDU|1|2a|G|774
5FDU|1|2a|G|775
5FDU|1|2a|G|776
5FDU|1|2a|A|777
5FDU|1|2a|G|778
*
5FDU|1|2a|U|804
5FDU|1|2a|C|805
Current chains
- Chain 2a
- 16S ribosomal RNA
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2D
- 50S ribosomal protein L2
- Chain 2k
- 30S ribosomal protein S11
- Chain 2o
- 30S ribosomal protein S15
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