IL_5FDU_330
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GACAU*AC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FDU_330 not in the Motif Atlas
- Geometric match to IL_4LFB_039
- Geometric discrepancy: 0.1748
- The information below is about IL_4LFB_039
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.3
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
5FDU|1|2a|G|993
5FDU|1|2a|A|994
5FDU|1|2a|C|995
5FDU|1|2a|A|996
5FDU|1|2a|U|997
*
5FDU|1|2a|A|1044
5FDU|1|2a|C|1045
Current chains
- Chain 2a
- 16S ribosomal RNA
Nearby chains
- Chain 2n
- 30S ribosomal protein S14 type Z
Coloring options: