IL_5FDU_361
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- G(4OC)C(5MC)*G(UR3)AAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4OC, 5MC, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FDU_361 not in the Motif Atlas
- Homologous match to IL_5J7L_059
- Geometric discrepancy: 0.0628
- The information below is about IL_5J7L_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.4
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5FDU|1|1a|G|1401
5FDU|1|1a|4OC|1402
5FDU|1|1a|C|1403
5FDU|1|1a|5MC|1404
*
5FDU|1|1a|G|1497
5FDU|1|1a|UR3|1498
5FDU|1|1a|A|1499
5FDU|1|1a|A|1500
5FDU|1|1a|C|1501
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1l
- 30S ribosomal protein S12
- Chain 1x
- Ribosome-associated inhibitor A
Coloring options: