IL_5FDU_364

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

5FDU|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_364 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.0565

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5FDU|1|2A|C|844
5FDU|1|2A|G|845
5FDU|1|2A|C|846
5FDU|1|2A|U|847
5FDU|1|2A|G|848
5FDU|1|2A|A|849
5FDU|1|2A|C|850
*
5FDU|1|2A|G|927
5FDU|1|2A|G|928
5FDU|1|2A|U|930
5FDU|1|2A|G|931
5FDU|1|2A|G|932
5FDU|1|2A|A|933
5FDU|1|2A|G|934

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30