IL_5FDU_368

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCCC*GGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDU_368 not in the Motif Atlas

Geometric match to IL_8CRE_417

Geometric discrepancy: 0.3989

The information below is about IL_8CRE_417

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

5FDU|1|2A|C|2137
5FDU|1|2A|C|2138
5FDU|1|2A|C|2139
5FDU|1|2A|C|2140
*
5FDU|1|2A|G|2151
5FDU|1|2A|G|2152
5FDU|1|2A|G|2153

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains