3D structure

PDB id
5FDV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
5FDV|1|1A|A|1425
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5FDV_052 not in the Motif Atlas
Homologous match to IL_7RQB_052
Geometric discrepancy: 0.0399
The information below is about IL_7RQB_052
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
20

Unit IDs

5FDV|1|1A|C|1397
5FDV|1|1A|U|1398
5FDV|1|1A|A|1399
5FDV|1|1A|A|1400
5FDV|1|1A|G|1401
*
5FDV|1|1A|C|1422
5FDV|1|1A|G|1423
5FDV|1|1A|A|1424
5FDV|1|1A|A|1425
5FDV|1|1A|G|1426

Current chains

Chain 1A
23S ribosomal RNA

Nearby chains

Chain 17
50S ribosomal protein L34
Chain 1D
50S ribosomal protein L2

Coloring options:


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