IL_5FDV_054

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

5FDV|1|1A|C|1631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_054 not in the Motif Atlas

Homologous match to IL_7RQB_054

Geometric discrepancy: 0.0699

The information below is about IL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67474.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5FDV|1|1A|U|1461
5FDV|1|1A|G|1462
*
5FDV|1|1A|C|1629
5FDV|1|1A|A|1630
5FDV|1|1A|C|1631
5FDV|1|1A|A|1632
5FDV|1|1A|A|1633

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains