IL_5FDV_063

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

5FDV|1|1A|C|1590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_063 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0508

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5FDV|1|1A|G|1572
5FDV|1|1A|G|1573
5FDV|1|1A|A|1574
5FDV|1|1A|A|1575
5FDV|1|1A|G|1576
*
5FDV|1|1A|U|1587
5FDV|1|1A|G|1588
5FDV|1|1A|A|1589
5FDV|1|1A|C|1590
5FDV|1|1A|A|1591
5FDV|1|1A|A|1592
5FDV|1|1A|C|1593

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains