IL_5FDV_085

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_085 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.3302

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

5FDV|1|1A|G|2132
5FDV|1|1A|C|2133
5FDV|1|1A|G|2134
5FDV|1|1A|U|2135
5FDV|1|1A|A|2136
5FDV|1|1A|G|2137
5FDV|1|1A|G|2138
5FDV|1|1A|A|2139
5FDV|1|1A|U|2140
5FDV|1|1A|A|2141
5FDV|1|1A|G|2142
*
5FDV|1|1A|C|2200
5FDV|1|1A|C|2201

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains