IL_5FDV_185

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGACAC*GUG

Length

10 nucleotides

Bulged bases

5FDV|1|2A|C|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_185 not in the Motif Atlas

Homologous match to IL_8VTW_009

Geometric discrepancy: 0.4883

The information below is about IL_8VTW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

14

Unit IDs

5FDV|1|2A|C|272|||J
5FDV|1|2A|G|274
5FDV|1|2A|G|275
5FDV|1|2A|A|276
5FDV|1|2A|C|277
5FDV|1|2A|A|278
5FDV|1|2A|C|279
*
5FDV|1|2A|G|361
5FDV|1|2A|U|362
5FDV|1|2A|G|363

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains