IL_5FDV_218
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAGUG*CUC
- Length
- 8 nucleotides
- Bulged bases
- 5FDV|1|2A|A|1088
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FDV_218 not in the Motif Atlas
- Geometric match to IL_5B2P_002
- Geometric discrepancy: 0.3721
- The information below is about IL_5B2P_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
5FDV|1|2A|G|1087
5FDV|1|2A|A|1088
5FDV|1|2A|G|1089
5FDV|1|2A|U|1090
5FDV|1|2A|G|1091
*
5FDV|1|2A|C|1100
5FDV|1|2A|U|1101
5FDV|1|2A|C|1102
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 29
- 50S ribosomal protein L36
- Chain 2Q
- 50S ribosomal protein L16
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