IL_5FDV_235

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

5FDV|1|2A|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_235 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.1925

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5FDV|1|2A|U|1481
5FDV|1|2A|G|1482
*
5FDV|1|2A|C|1506
5FDV|1|2A|A|1507
5FDV|1|2A|A|1508
5FDV|1|2A|C|1509
5FDV|1|2A|A|1509|||A
5FDV|1|2A|A|1509|||B
5FDV|1|2A|G|1510

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains