IL_5FDV_241

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

5FDV|1|2A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_241 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.058

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

5FDV|1|2A|A|1669
5FDV|1|2A|C|1670
5FDV|1|2A|U|1671
5FDV|1|2A|C|1672
5FDV|1|2A|U|1673
5FDV|1|2A|G|1674
*
5FDV|1|2A|C|1990
5FDV|1|2A|U|1991
5FDV|1|2A|G|1992
5FDV|1|2A|U|1993

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14