IL_5FDV_280

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5FDV|1|2A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_280 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0436

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5FDV|1|2A|U|2636
5FDV|1|2A|U|2637
5FDV|1|2A|G|2638
5FDV|1|2A|A|2639
5FDV|1|2A|G|2640
*
5FDV|1|2A|C|2774
5FDV|1|2A|A|2775
5FDV|1|2A|A|2776
5FDV|1|2A|G|2777
5FDV|1|2A|A|2778
5FDV|1|2A|U|2779
5FDV|1|2A|G|2780
5FDV|1|2A|A|2781
5FDV|1|2A|G|2782

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13