IL_5FDV_283

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

5FDV|1|2A|U|2689

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_283 not in the Motif Atlas

Homologous match to IL_9DFE_104

Geometric discrepancy: 0.0771

The information below is about IL_9DFE_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

5FDV|1|2A|U|2687
5FDV|1|2A|U|2688
5FDV|1|2A|U|2689
5FDV|1|2A|C|2690
5FDV|1|2A|C|2691
*
5FDV|1|2A|G|2718
5FDV|1|2A|G|2719
5FDV|1|2A|U|2720
5FDV|1|2A|A|2721
5FDV|1|2A|G|2722

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19