IL_5FDV_303

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

5FDV|1|2a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_303 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0833

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

5FDV|1|2a|G|148
5FDV|1|2a|A|149
5FDV|1|2a|C|150
5FDV|1|2a|A|151
5FDV|1|2a|A|152
5FDV|1|2a|C|153
*
5FDV|1|2a|G|168
5FDV|1|2a|C|169
5FDV|1|2a|U|170
5FDV|1|2a|A|171
5FDV|1|2a|A|172
5FDV|1|2a|U|173
5FDV|1|2a|C|174

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20